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Publications while at SLU

21. Samuelian, J.S., Gremminger, T.J., Song, Z., Poudyal, R.R., Li, J., Zhou, Y., Staller, S.A., Carballo, J.A., Roychowdhury-Saha, M., Chen, S., Burke, D.H., Heng, X., & Baum, D. A. (2022) "An RNA aptamer that shifts the reduction potential of metabolic cofactors" Nat. Chem. Biol., 18, 1263-1269. DOI:10.1038/s41589-022-01121-4

Highlighted on Faculty Opinions: Müller S, Faculty Opinions Recommendation of Samuelian JS et al., Nat Chem Biol 2022. In Faculty Opinions, 26 Sep 2022; DOI:10.3410/f.742319403.793595442

20. Samuelian, J. S. & Baum, D. A. (2022) "Identification of DNA Aptamers for Benzodiazepine Detection in Synthetic Urine" Anal. Sens. e202200044. DOI:10.1002/anse.202200044

Cover Art Feature (created by former lab member, Marc Polaske): DOI:10.1002/anse.202200107

19. TeSelle, E. K. & Baum, D. A. (2018) "Isolation of DNA aptamers for herbicides under varying divalent metal ion conditions" Aptamers 2, 82-87. ISSN: 2514-3247

18. Emahi, I., Mitchell, M. P., & Baum, D. A. (2017) "Electrochemistry of Pyrroloquinoline Quinone (PQQ) on Multi-Walled Carbon Nanotube-Modified Glassy Carbon Electrodes in Biological Buffers" J. Electrochem. Soc., 164, H3097-H3102. DOI:10.1149/2.0151703jes

17. Emahi, I., Gruenke, P. R., & Baum, D. A. (2015) "Effect of Aptamer Binding on the Electron-Transfer Properties of Redox Cofactors" J. Mol. Evol., 81, 186-193. DOI:10.1007/s00239-015-9707-7

16. Emahi, I., Mulvihill, I. M., & Baum, D. A. (2015) "Pyrroloquinoline quinone maintains redox activity when bound to a DNA aptamer" RSC Adv., 5, 7450-7453. DOI:10.1039/c4ra11052h

15. Hausmann, N. Z., Minteer, S. D., & Baum, D. A. (2014) "Controlled Placement of Enzymes on Carbon Nanotubes using Comb-Branched DNA" J. Electrochem. Soc. 161, H3001-H3004. DOI:10.1149/2.0011413jes

14. Korang, J., Emahi, I., Grither, W. R., Baumann, S. M., Baum, D. A. & McCulla, R. D. (2013) "Photoinduced DNA cleavage by atomic oxygen precursors in aqueous solutions" RSC Advances 3, 12390-12397. DOI:10.1039/C3RA41597J

13. Behera, A. K., Schlund, K. J., Mason, A. J., Alila, K. O., Han, M., Grout, R. L. & Baum, D. A. (2013) "Enhanced deoxyribozyme-catalyzed RNA ligation in the presence of organic cosolvents" Biopolymers 99, 382-391. DOI:10.1002/bip.22191

12. Zhang, M., Xu, S., Minteer, S. D. & Baum, D. A. (2011) "Investigation of a deoxyribozyme as a biofuel cell catalyst" J. Am. Chem. Soc. 133, 15890-15893. DOI:10.1021/ja206787h

11. Alila, K. O. & Baum, D. A. (2011) "Modulation of an RNA-branching deoxyribozyme by a small molecule" Chem. Commun. 47, 3227-3229. DOI:10.1039/C0CC04971A

10. Silverman, S. K. & Baum, D. A. (2009) "Use of Deoxyribozymes in RNA Research" Methods Enzymol. 469, 95-117. DOI:10.1016/S0076-6879(09)69005-4

Previous Publications as a Graduate Student and Postdoc

9. Baum, D. A. & Silverman, S. K. (2008) “Deoxyribozymes: Useful DNA Catalysts In Vitro and In Vivo” Cell. Mol. Life Sci. 65, 2156-2174. DOI:10.1007/s00018-008-8029-y

8. Pradeepkumar, P. I., Höbartner, C., Baum, D. A. & Silverman, S. K. (2008) “DNA-Catalyzed Formation of Nucleopeptide Linkages” Angew. Chem. Int. Ed. 47, 1753-1757. DOI:10.1002/anie.200703676

7. Patel, M. P., Baum, D. A. & Silverman, S. K. (2008) “Improvement of DNA Adenylation Using T4 DNA Ligase with a Template Strand and a Strategically Mismatched Acceptor Strand” Bioorg. Chem. 36, 46-56. DOI:10.1016/j.bioorg.2007.10.001

6. Baum, D. A. & Silverman, S. K. (2007) “Deoxyribozyme-Catalyzed Labeling of RNA” Angew. Chem. Int. Ed. 46, 3502-3504. DOI:10.1002/anie.200700357

5. Baum, D. A. & Testa, S. M. (2005) “In Vivo Excision of a Single Targeted Nucleotide from an mRNA by a Trans Excision-Splicing Ribozyme” RNA 11, 897-905. DOI:10.1261/rna.2050505

4. Alexander, R. C., Baum, D. A., & Testa, S. M. (2005) “5’ Transcript Replacement in vitro Catalyzed by a Group I Intron-Derived Ribozyme” Biochemistry 44, 7796-7804. DOI:10.1021/bi047284a

3. Baum, D. A.*, Sinha, J.* & Testa, S. M. (2005) “Molecular Recognition in a Trans Excision-Splicing Ribozyme: Non-Watson-Crick Base Pairs at the 5’ Splice Site and ?G at the 3’ Splice Site Can Play a Role in Determining the Binding Register of Reaction Substrates” Biochemistry 44, 1067-1077. *Contributed equally to this work DOI:10.1021/bi0482304

2. Johnson, A. K., Baum, D. A., Tye, J., Bell, M. A., & Testa, S. M. (2003) “Molecular Recognition Properties of IGS-Mediated Reactions Catalyzed by a Pneumocystis carinii Group I Intron” Nucleic Acids Res. 31, 1921-1934. DOI:10.1093/nar/gkg280

1. International Human Genome Sequencing Consortium (2001) “Initial sequencing and analysis of the human genome” Nature 409, 860-921. (Member of the Washington University Genome Sequencing Center)

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